Characterisation-Virtual-Laboratory/CharacterisationVL-Software:cistem-1.0.0-beta

$ singularity pull shub://Characterisation-Virtual-Laboratory/CharacterisationVL-Software:cistem-1.0.0-beta

Singularity Recipe

Bootstrap: shub
From:      Characterisation-Virtual-Laboratory/CharacterisationVL-Software:1804

%labels
    MAINTAINER_NAME  Jay van Schyndel
    MAINTAINER_EMAIL jay.vanschyndel@monash.edu

    APPLICATION_NAME ubuntu
    APPLICATION_VERSION 18.04

    HARDWARE CPU

    LAST_UPDATED 10-MAY-2019

%environment
    CISTEM_PATH="/opt/cistem-1.0.0-beta"
    export PATH="$CISTEM_PATH:$PATH"

%post -c /bin/bash
    echo "*********************************************************"
    echo "Setup and display environment"
    echo "*********************************************************"
    export LC_ALL=en_AU.UTF-8
    export LANGUAGE=en_AU.UTF-8
    export DEBIAN_FRONTEND=noninteractive
    echo $LC_ALL
    echo $LANGUAGE
    echo $DEBIAN_FRONTEND
    echo "*********************************************************"
    echo "Install repositories"
    echo "*********************************************************"
    apt-get install -y software-properties-common
    apt-add-repository -y 'deb http://us.archive.ubuntu.com/ubuntu/ bionic main restricted'
    apt-add-repository -y 'deb http://us.archive.ubuntu.com/ubuntu/ bionic-updates main restricted'
    apt-add-repository -y 'deb http://us.archive.ubuntu.com/ubuntu/ bionic universe'
    apt-add-repository -y 'deb http://us.archive.ubuntu.com/ubuntu/ bionic-updates universe'
    echo "*********************************************************"
    echo "Update repositories and install desktop"
    echo "*********************************************************"
    apt update
    apt upgrade -y
    apt install -y locales
    locale-gen en_AU.UTF-8

    echo "########################################"
    echo "# Installing cisTEM - 1.0.0-beta-intel #"
    echo "########################################"

    echo "Installing dependencies"
    apt install -y libgtk2.0-0 libgtk2.0-dev libcanberra-gtk-module

    cd /opt
    #The website URL is https://cistem.org/system/tdf/upload3/cistem-1.0.0-beta-intel-linux.tar.gz?file=1&type=cistem_details&id=37&force=0&s3fs=1 It redirects to AWS. Using the direct link
    wget https://cistem.s3.amazonaws.com/cistem-1.0.0-beta-intel-linux.tar.gz
   
    tar -zxvf cistem-1.0.0-beta-intel-linux.tar.gz


%runscript
    $*

Collection


View on Datalad

Metrics

key value
id /containers/Characterisation-Virtual-Laboratory-CharacterisationVL-Software-cistem-1.0.0-beta
collection name Characterisation-Virtual-Laboratory/CharacterisationVL-Software
branch master
tag cistem-1.0.0-beta
commit fdb426a7b3fe1e943520984885c3b5b31b44e3b7
version (container hash) 3ecc91c4e4e0397d10e22f461c131f06
build date 2020-09-16T23:38:32.334Z
size (MB) 4656
size (bytes) 2125987871
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.