CHRUdeLille/nextflowgularity:latest
$ singularity pull shub://CHRUdeLille/nextflowgularity:latest
Singularity Recipe
# =====================================
# HEADER
# =====================================
Bootstrap: docker
From: nextflow/nextflow:0.29.1
%labels
MAINTAINER christophe.demay@chru-lille.fr
CONTAINER_VERSION 0.0.1
SINGULARITY_VERSION 2.5.1
NEXTFLOW_VERSION 0.29.1
%setup
%files
%environment
NXF_OPTS='-XX:+UnlockExperimentalVMOptions -XX:+UseCGroupMemoryLimitForHeap'
NXF_HOME=/.nextflow
%help
%post
# =====================================
# INSTALL DEPENDENCIES
# =====================================
apk update && apk upgrade
apk add --no-cache coreutils
apk add --no-cache curl bash
apk add --no-cache wget
apk add --no-cache build-base
apk add --no-cache python
apk add --no-cache --upgrade tar
apk add --no-cache linux-headers
apk add --no-cache libarchive-dev
apk add --no-cache squashfs-tools
apk add --no-cache sudo
# =====================================
# INSTALL SINGULARITY
# =====================================
mkdir -p /opt/singularity && cd /opt/singularity
SINGULARITY_VERSION=2.5.1
wget https://github.com/singularityware/singularity/releases/download/$SINGULARITY_VERSION/singularity-$SINGULARITY_VERSION.tar.gz
tar xvf singularity-$SINGULARITY_VERSION.tar.gz
cd singularity-$SINGULARITY_VERSION
./configure --prefix=/usr/local
make
sudo make install
Collection
- Name: CHRUdeLille/nextflowgularity
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/CHRUdeLille-nextflowgularity-latest |
collection name | CHRUdeLille/nextflowgularity |
branch | master |
tag | latest |
commit | 3c43d853b377b27a4e402a0571f5a98f8885bac8 |
version (container hash) | 8e31175439ed6748cab9f5182c148583 |
build date | 2018-08-01T12:24:34.930Z |
size (MB) | 373 |
size (bytes) | 161660959 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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