CHRUdeLille/nextflowgularity:0.28.0

$ singularity pull shub://CHRUdeLille/nextflowgularity:0.28.0

Singularity Recipe

# =====================================
# HEADER
# =====================================
Bootstrap: docker
From: nextflow/nextflow:0.28.0

%labels
  MAINTAINER christophe.demay@chru-lille.fr
  CONTAINER_VERSION 0.0.1
  SINGULARITY_VERSION 2.4.6
  NEXTFLOW_VERSION 0.28.0

%setup

%files

%environment
  NXF_OPTS='-XX:+UnlockExperimentalVMOptions -XX:+UseCGroupMemoryLimitForHeap' 
  NXF_HOME=/.nextflow
  
%help

%post
  # =====================================
  # INSTALL DEPENDENCIES
  # =====================================
  apk update && apk upgrade 
  apk add --no-cache coreutils 
  apk add --no-cache curl bash 
  apk add --no-cache wget 
  apk add --no-cache build-base 
  apk add --no-cache python
  apk add --no-cache --upgrade tar
  apk add --no-cache linux-headers
  apk add --no-cache sudo
  
  
  # =====================================
  # INSTALL SINGULARITY
  # =====================================

  mkdir -p /opt/singularity && cd /opt/singularity

  SINGULARITY_VERSION=2.4.6
  wget https://github.com/singularityware/singularity/releases/download/$SINGULARITY_VERSION/singularity-$SINGULARITY_VERSION.tar.gz
  tar xvf singularity-$SINGULARITY_VERSION.tar.gz
  cd singularity-$SINGULARITY_VERSION
  ./configure --prefix=/usr/local
  make
  sudo make install

Collection


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Metrics

key value
id /containers/CHRUdeLille-nextflowgularity-0.28.0
collection name CHRUdeLille/nextflowgularity
branch master
tag 0.28.0
commit e5f6537e5601032f0a67a40fe63135e84e3e90e7
version (container hash) baf6f0cf2c1d60a37c7f4daba54b1c28
build date 2018-08-01T12:24:34.937Z
size (MB) 368
size (bytes) 160342047
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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