CHRUdeLille/bcl2fastq2_containers:2.20.0.422

$ singularity pull shub://CHRUdeLille/bcl2fastq2_containers:2.20.0.422

Singularity Recipe

#!/bin/bash
#
# Emilie Ait Yahya <emilie.aityahya@chru-lille.fr>
# 2018/11/18: initial version

BootStrap: docker
From: phusion/baseimage:0.11
%labels
MAINTAINER emilie.aityahya@chru-lille.fr
BCL2FASTQ2_VERSION 2.20.0
RECIPE_VERSION 0.1

%environment
export TMP=/tmp
export SOURCE=${TMP}/bcl2fastq2
export BUILD=${TMP}/bcl2fastq2-v2-20-0-build
export INSTALL_DIR=/usr/local/bcl2fastq2-v2.20.0

%help
echo ""
Singularity container for bcl2fastq2 2.20.0 <http://emea.support.illumina.com/downloads/bcl2fastq-conversion-software-v2-20.html>
bcl2fastq2 Conversion Software v2.20 User Guide available here <http://emea.support.illumina.com/content/dam/illumina-support/documents/documentation/software_documentation/bcl2fastq/bcl2fastq2_guide_15051736_v2.pdf>

%post
apt-get update
apt-get install -y wget unzip alien dpkg-dev debhelper build-essential
cd ${SOURCE}/
wget http://emea.support.illumina.com/content/dam/illumina-support/documents/downloads/software/bcl2fastq/bcl2fastq2-v2-20-0-linux-x86-64.zip
unzip *.zip
alien ${TMP}/bcl2fastq2-*.rpm
dpkg -i ${TMP}/bcl2fastq2*.deb

#cd ${INSTALL_DIR}
apt-get clean

Collection


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Metrics

key value
id /containers/CHRUdeLille-bcl2fastq2_containers-2.20.0.422
collection name CHRUdeLille/bcl2fastq2_containers
branch master
tag 2.20.0.422
commit 1d23b0b160c3efdb7b47809ae07f89b26948304f
version (container hash) 94110c9f334a0bf9905e5f4b4ca3505f
build date 2018-11-20T17:27:30.328Z
size (MB) 497
size (bytes) 187277343
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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