CATG-UMAG/bcell-lymphomas-mutational-signatures:signature_analysis
$ singularity pull shub://CATG-UMAG/bcell-lymphomas-mutational-signatures:signature_analysis
Singularity Recipe
Bootstrap: docker
From: r-base:4.0.5
%labels
Author Diego Alvarez (dialvarezs@gmail.com)
Description Contains Jupyter with IRkernel an some R packages (nnls,tidyverse,deconstructSigs mainly)
%post
apt update -y && apt upgrade -y
# install packages. use precompiled R packages to reduce container creation time
apt install -y procps python3-pip \
r-cran-cluster r-cran-cowplot r-cran-r.utils r-cran-factoextra r-cran-irkernel r-cran-nnls r-cran-tidyverse \
r-cran-biocmanager r-bioc-bsgenome r-bioc-genomeinfodb r-bioc-variantannotation
# install jupyter
pip3 install jupyter jupyterlab nbconvert
# install deconstructSigs
R -e "BiocManager::install('deconstructSigs')"
# install R jupyter kernel
R -e "IRkernel::installspec()"
Collection
- Name: CATG-UMAG/bcell-lymphomas-mutational-signatures
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/CATG-UMAG-bcell-lymphomas-mutational-signatures-signature_analysis |
collection name | CATG-UMAG/bcell-lymphomas-mutational-signatures |
branch | main |
tag | signature_analysis |
commit | 8c1fc415e5bbd8c19338c6ca063101857951eb3a |
version (container hash) | 9e621b7280e4e2a327612d544bf4dc3c2206fe0de5ed5ed7be9d4e43e1d14c67 |
build date | 2021-04-15T02:56:55.556Z |
size (MB) | 1335.0703125 |
size (bytes) | 1399922688 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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