CATG-UMAG/bcell-lymphomas-mutational-signatures:signature_analysis

$ singularity pull shub://CATG-UMAG/bcell-lymphomas-mutational-signatures:signature_analysis

Singularity Recipe

Bootstrap: docker
From: r-base:4.0.5


%labels
    Author Diego Alvarez (dialvarezs@gmail.com)
    Description Contains Jupyter with IRkernel an some R packages (nnls,tidyverse,deconstructSigs mainly)

%post
    apt update -y && apt upgrade -y
    # install packages. use precompiled R packages to reduce container creation time
    apt install -y procps python3-pip \
        r-cran-cluster r-cran-cowplot r-cran-r.utils r-cran-factoextra r-cran-irkernel r-cran-nnls r-cran-tidyverse \
        r-cran-biocmanager r-bioc-bsgenome r-bioc-genomeinfodb r-bioc-variantannotation

    # install jupyter
    pip3 install jupyter jupyterlab nbconvert

    # install deconstructSigs
    R -e "BiocManager::install('deconstructSigs')"
    # install R jupyter kernel
    R -e "IRkernel::installspec()"

Collection


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Metrics

key value
id /containers/CATG-UMAG-bcell-lymphomas-mutational-signatures-signature_analysis
collection name CATG-UMAG/bcell-lymphomas-mutational-signatures
branch main
tag signature_analysis
commit 8c1fc415e5bbd8c19338c6ca063101857951eb3a
version (container hash) 9e621b7280e4e2a327612d544bf4dc3c2206fe0de5ed5ed7be9d4e43e1d14c67
build date 2021-04-15T02:56:55.556Z
size (MB) 1335.0703125
size (bytes) 1399922688
SIF Download URL (please use pull with shub://)
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