BrendelGroup/AllRice:ddn
$ singularity pull shub://BrendelGroup/AllRice:ddn
Singularity Recipe
bootstrap: docker
From: ubuntu:14.04
%help
This container provides a working version of DiscovarDeNovo.
(Note: The code does not compile on newer gcc versions in our hands.)
%post
export DEBIAN_FRONTEND=noninteractive
apt -y update
apt -y install build-essential
apt -y install git tcsh tzdata unzip wget zip
apt -y install ncurses-dev libcurl4-openssl-dev zlib1g-dev libbz2-dev liblzma-dev
apt -y install libjemalloc-dev
apt -y install python python-biopython
### Installing prerequisites and DiscovarDeNovo
echo 'Installing HTSLIB from http://www.htslib.org/ '
cd /opt
git clone git://github.com/samtools/htslib.git htslib
cd htslib
make && make install
echo 'Installing SAMTOOLS from http://www.htslib.org/ '
cd /opt
git clone git://github.com/samtools/samtools.git samtools
cd samtools
make && make install
echo 'Installing DiscovarDenovo from https://software.broadinstitute.org/software/discovar/blog/ '
cd /opt
wget ftp://ftp.broadinstitute.org/pub/crd/DiscovarDeNovo/latest_source_code/discovardenovo-52488.tar.gz
tar xzf discovardenovo-52488.tar.gz
cd discovardenovo-52488
./configure
make && make install
### Installing additional software
echo 'Installing scripts from AllRice repository '
cd /opt
git clone https://github.com/BrendelGroup/AllRice
cp AllRice/bin/* /usr/local/bin
%environment
export LC_ALL=C
%labels
Maintainer vpbrendel
Version v1.1
Collection
- Name: BrendelGroup/AllRice
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/BrendelGroup-AllRice-ddn |
collection name | BrendelGroup/AllRice |
branch | main |
tag | ddn |
commit | edf58bf226f68cd8ce71ed7ae55380a02f32b8b2 |
version (container hash) | 1679aff38c3d3f257f8d644baa0a11681cd2c240f558e50a18be43234ea328d1 |
build date | 2020-12-23T22:17:05.965Z |
size (MB) | 1081.09765625 |
size (bytes) | 1133613056 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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