BUBioinformaticsHub/bubhub-singularity-apps:template

$ singularity pull shub://BUBioinformaticsHub/bubhub-singularity-apps:template

Singularity Recipe

Bootstrap: docker
From: ubuntu:latest

%help
echo "Usage: singularity run "


%runscript
$@


%post
apt-get update --fix-missing
apt-get --no-install-recommends -y install \
    git build-essential wget unzip ca-certificates

# squelch perl complaining about locale settings it doesn't understand
LANG=C
LANGUAGE=$LANG
LC_ALL=$LANG
export LANG LANGUAGE LC_ALL

# these are specific to scc
# create the directories in case OverlayFS support wasn't built in
for d in /scratch /share /project /projectnb /restricted /usr1 /usr2 /usr3 /usr4 /var/spool/sge;
do
  rm -rf $d
  mkdir $d
done

Collection


View on Datalad

Metrics

key value
id /containers/BUBioinformaticsHub-bubhub-singularity-apps-template
collection name BUBioinformaticsHub/bubhub-singularity-apps
branch master
tag template
commit 8166e4a2c15de95410ccf1ae1d84c2d790b07baf
version (container hash) 91d7f6df79d3c1baadfd27b32572075d
build date 2018-10-16T23:20:50.103Z
size (MB) 351
size (bytes) 135483423
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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