AroArz/singularity_playground:biobakery

$ singularity pull shub://AroArz/singularity_playground:biobakery

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3


%post
	### Sets correct channels and installs metaphlan3, humann3, strainphlan3 and krona

	PATH=/opt/conda/bin:$PATH
        export PATH	

	conda config --add channels defaults
	conda config --add channels bioconda
	conda config --add channels conda-forge
	conda config --add channels biobakery

	conda install -c bioconda -c biobakery python=3.7 metaphlan humann krona=2.7.1 -y


	humann_databases --download utility_mapping full /opt/humann --update-config yes
%files


%runscript
	echo "$@"

Collection


View on Datalad

Metrics

key value
id /containers/AroArz-singularity_playground-biobakery
collection name AroArz/singularity_playground
branch biobakery
tag biobakery
commit 19f4709df6b5c97549d8b960be915685a9d30669
version (container hash) cb8340179644777f660fa7d04ff3daa22c73dc0f220853c915171bfca2edcd8c
build date 2021-04-19T12:57:53.480Z
size (MB) 3628.68359375
size (bytes) 3804950528
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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