AroArz/singularity_playground:biobakery
$ singularity pull shub://AroArz/singularity_playground:biobakery
Singularity Recipe
Bootstrap: docker
From: continuumio/miniconda3
%post
### Sets correct channels and installs metaphlan3, humann3, strainphlan3 and krona
PATH=/opt/conda/bin:$PATH
export PATH
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda config --add channels biobakery
conda install -c bioconda -c biobakery python=3.7 metaphlan humann krona=2.7.1 -y
humann_databases --download utility_mapping full /opt/humann --update-config yes
%files
%runscript
echo "$@"
Collection
- Name: AroArz/singularity_playground
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/AroArz-singularity_playground-biobakery |
collection name | AroArz/singularity_playground |
branch | biobakery |
tag | biobakery |
commit | 19f4709df6b5c97549d8b960be915685a9d30669 |
version (container hash) | cb8340179644777f660fa7d04ff3daa22c73dc0f220853c915171bfca2edcd8c |
build date | 2021-04-19T12:57:53.480Z |
size (MB) | 3628.68359375 |
size (bytes) | 3804950528 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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