AdrienLeGuillou/singularity-r:latest

$ singularity pull shub://AdrienLeGuillou/singularity-r:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:18.04

%post
  # Software versions
  export R_VERSION=3.6.2
  export DEBIAN_FRONTEND=noninteractive
  export DEBCONF_NONINTERACTIVE_SEEN=true

  # Get dependencies
  echo 'tzdata tzdata/Areas select Etc' | debconf-set-selections
  echo 'tzdata tzdata/Zones/Etc select UTC' | debconf-set-selections
  apt-get update -qqy
  apt-get install -qqy --no-install-recommends \
    tzdata \
    locales \
    gnupg \
    ca-certificates

  # Configure default locale
  echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
  locale-gen en_US.utf8
  /usr/sbin/update-locale LANG=en_US.UTF-8
  export LC_ALL=en_US.UTF-8
  export LANG=en_US.UTF-8

  # Install R
  echo "deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/" > /etc/apt/sources.list.d/r.list
  apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9

  apt-get update
  apt-get install -y --no-install-recommends \
    r-base=${R_VERSION}* \
    r-base-core=${R_VERSION}* \
    r-base-dev=${R_VERSION}* \
    r-recommended=${R_VERSION}* \
    r-base-html=${R_VERSION}* \
    r-doc-html=${R_VERSION}* \
    libcurl4-openssl-dev \
    libssl-dev \
    libxml2-dev \
    libcairo2-dev \
    libxt-dev \
    less

  # Add a default CRAN mirror
  echo "options(repos = c(CRAN = 'https://cloud.r-project.org/'), download.file.method = 'libcurl')" >> /usr/lib/R/etc/Rprofile.site

  # Add a directory for host R libraries
  mkdir -p /library
  echo "R_LIBS_SITE=/library:\${R_LIBS_SITE}" >> /usr/lib/R/etc/Renviron.site

  # Clean up
  apt-get clean
  rm -rf /var/lib/apt/lists/*

%labels
  Maintaner Adrien Le Guillou
  R_Version 3.6.2

%apprun R
  exec R "${@}"

%apprun Rscript
  exec Rscript "${@}"

%runscript
  exec R "${@}"

Collection


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Metrics

key value
id /containers/AdrienLeGuillou-singularity-r-latest
collection name AdrienLeGuillou/singularity-r
branch master
tag latest
commit af252faebb27a231e71cb3f0d9d2100e60d5b32f
version (container hash) 51426386ee5fbcb389187da2b7528df2669489e5a1fd73419b84af2163a4beff
build date 2020-01-03T14:25:38.343Z
size (MB) 221.46875
size (bytes) 232226816
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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