User Guide

If you haven’t installed Guts yet, you should read Installation first.

Commands

Guts currently has just one client command, “manifest” to get a manifest of executables on the PATH!

Manifest

Using guts on the command line is the easiest way to test it manually, and by default, the results will be printed to the screen. The manifest command will generate “guts” for an image:

$ guts manifest ubuntu

If you provide an output file, it will save to it:

$ guts manifest --outfile ubuntu-guts.json ubuntu

By default, we extract executables on the PATH. However, you can also ask to extract all filesystem paths:

$ guts manifest --include fs ubuntu

Or to get fs and paths:

$ guts manifest --include paths --include fs ubuntu --outfile ubuntu-guts.json

This generic “manifest” command is the main entrypoint to extract guts.

Diff

under development

A diff will take your container and compares it against a set of base images, and only reveals the diff output (the executables in PATH that are special to your container). If you don’t provide a database (repository or path on the filesystem) we use the default at singularityhub/shpc-guts.

$ guts diff vanessa/salad

Note that this command is not officially added yet!

GitHub Action

You can use one of our GitHub actions to extract guts!

Single Image Manifest

For a single image (e.g., on dispatch)

name: Generate Container Guts
on:
  workflow_dispatch:
    inputs:
      docker_uri:
        description: 'Docker identifier to generate recipe for'
        required: true
        default: "quay.io/autamus/clingo:5.5.1"
jobs:
  generate-recipe:
    runs-on: ubuntu-latest
    name: ${{ inputs.docker_uri }}
    steps:
      - name: Checkout Repository
        uses: actions/checkout@v3
      - name: Guts for ${{ inputs.docker_uri }}
        uses: singularityhub/guts/action/manifest@main
        with:
          image: ${{ inputs.docker_uri }}
          outfile: ${{ inputs.docker_uri }}
      - name: View Output
        run: cat ${{ matrix.image }}.json

Matrix Images Manifest

or for a matrix! E.g., you might want to save them nested in their directory location.

name: Generate Container Guts
on:
  pull_request: []
  generate-recipes:
    runs-on: ubuntu-latest
    strategy:
      max-parallel: 4
      matrix:
        image: ["ubuntu", "centos", "rockylinux:9.0", "alpine", "busybox"]

    name: Generate Matrix
    steps:
      - name: Checkout Repository
        uses: actions/checkout@v3
      - name: Guts for ${{ matrix.image }}
        uses: singularityhub/guts/action/manifest@main
        with:
          image: ${{ matrix.image }}
          outfile: ${{ matrix.image }}.json
      - name: View Output
        run: cat ${{ matrix.image }}.json

If you want the library to generate the namespace of the output files, you can instead just provide an output directory. The example below also shows how to get the path as an output:

…

name: Generate Matrix steps:

name: Checkout Repository uses: actions/checkout@v3

name: Guts for ${{ matrix.image }} uses: singularityhub/guts/action/manifest@main id: guts with:

image: ${{ matrix.image }} outdir: ${{ github.workspace }}

name: View Output env:

outfile: ${{ steps.guts.outputs.outfile }}

run: cat ${outfile}

Diff

The core functionality of guts is to discover new or interesting things in the PATH, and this is the goal of diff. You can provide a guts root path with your custom guts (e.g., the content of shpc-guts but if it’s not provided, we will clone that one, which updates base images nightly.

name: Diff Container Guts
on:
  pull_request: []
  generate-recipes:
    runs-on: ubuntu-latest
    strategy:
      max-parallel: 4
      matrix:
        image: ["vanessa/salad"]

    name: Generate Diffs
    steps:
      - name: Checkout Repository
        uses: actions/checkout@v3
      - name: Diff for ${{ matrix.image }}
        uses: singularityhub/guts/action/diff@main
        id: guts
        with:
          image: ${{ matrix.image }}
      - name: View Output
        run: cat ${{ steps.guts.outputs.outfile }}

The above would be the same as doing:

- name: Diff for ${{ matrix.image }}
  uses: singularityhub/guts/action/diff@main
  with:
    image: ${{ matrix.image }}
    database: https://github.com/singularityhub/shpc-guts

Note that for all of the above, by default guts will be installed for you, unless you install a custom version in a previous step.